Skip to main navigation menu Skip to main content Skip to site footer
The Nansen Legacy Report Series

Protocols

No. 14 (2020): Sampling Protocols: Version 6

Sampling Protocols: Version 6

  • The Nansen Legacy
DOI
https://doi.org/10.7557/nlrs.5720
Submitted
December 10, 2020
Published
2020-12-18

Abstract

The collection of detailed sampling protocols is crucial tool for the success of the Nansen Legacy, because they ensure:

  • Methodological agreement between the involved researchers
  • Continuity and comparable data throughout the 5 years sampling period
  • An easily accessible overview over parameters sampled
  • Easier cruise planning

 

References

  1. Andersen, R.A. & Kawachi, M. 2005. Traditional microalgae isolation techniques. In: Andersen, R. A. (ed). Algal Culturing Techniques. Elsevier Academic Press, 578 p.
  2. Anon. 1990. Manual for the International Young Fish Surveys in the North Sea, Skagerrak and Kattegat.
  3. Bollmann J, Cortes MY, Haidar AT, Brabec B, Close A, Hofmann R, et al. Techniques for quantitative analyses of calcareous marine phytoplankton. Mar Micropaleontol. 2002;44(3–4):163–85.
  4. Edler, L.& Elbrächter, M. 2010. 2. The Utermöhl method for quantitative phytoplankton analysis. In: Karlsson, B. (ed.). Microscopic and molecular methods for quantitative phytoplankton analysis. IOC, UNESCO. Manuals and guides 55:13-20.
  5. Edvardsen et al. 2003. Genetic variability and molecular phylogeny of Dinophysis species (Dinophyceae) from Norwegian waters inferred from single cell analyses of rDNA. J. Phycol. 39: 395-408. https://doi.org/10.1046/j.1529-8817.2003.01252.x
  6. Harris, Roger; Wiebe, Peter; Lenz, Jurgen; Skjoldal, Hein-Rune; Huntley, Mark (2000): ICES zooplankton methodology manual: Elsevier.
  7. Hassel, A., Endresen, B., Martinussen, M., Gjertsen, K., Knutsen, T., Johannessen, M. (2018). Prosedyrer for prøvetaking og pre-analyse av dyre- og planteplankton på forskningsfartøy og i laboratorium på land. Versjon 4.0 (november 2018). Havforskningsinstituttets kvalitetshåndbok.
  8. Heino, M., Porteiro, F.M., Sutton, T.T., Falkenhaug, T., Godø, O.R., Piatkowski, U., 2011. Catchability of pelagic trawls for sampling deep-living nekton in the mid-North Atlantic. ICES Journal of Marine Science 68, 377–389. https://doi.org/10.1093/icesjms/fsq089
  9. ICES (2015). Manual for International Pelagic Surveys (IPS). Series of ICES Survey Protocols SISP 9 - IPS. 1–92.
  10. ICES 2013. Manual for the Midwater Ring Net sampling during IBTS Q1. Series of ICES Survey Protocols SISP 2-MIK 2. 18pp.
  11. ICES 2016. Interim report of the Working Group on North Sea cod and plaice egg survey in the North Sea 2 (WGEGGS2). ICES CM 2016/SSGIEOM:26.
  12. John, S., Poulos, B., and Schirmer C. (2015). Ion Chloride Precipitation of viruses from seawater, Protocols.io. https://www.protocols.io/view/Iron-Chloride-Precipitation-of-Viruses-from-Seawat-c2wyfd
  13. Kiørboe, Thomas; Sabatini, Marina (1994): Reproductive and life cycle strategies in egg-carrying cyclopoid and free-spawning calanoid copepods. In: Journal of Plankton Research 16 (10), S. 1353–1366.
  14. Kirchman D (2001) Measuring bacterial biomass production and growth rates from leucine incorporation in natural aquatic environments. Methods in Microbiology. 30: 227-237. https://doi.org/10.1016/S0580-9517(01)30047-8
  15. Kirchman DL (1993). Leucine incorporation as a measure of biomass production by heterotrophic bacteria. In: Current Methods in Aquatic Microbial Ecology (P. Kemp, BE Sherr EB Sherr and JJ Cole, Eds). Lewis Publishers, Boca Raton, EL.
  16. Korneliussen, R. J., Heggelund, Y., Macaulay, G. J., Patel, D., Johnsen, E., and Eliassen, I. K. (2016). Acoustic identification of marine species using a feature library. Methods Oceanogr. 17, 187–205. doi: 10.1016/j.mio.2016.09.002.
  17. Korneliussen, R. J., Ona, E., Eliassen, I., Heggelund, Y., Patel, R., Godø, O. R., Giertsen, C., et al. (2006). “The large scale survey system - LSSS,” in Proceedings of the 29th Scandinavian Symposium on Physical Acoustics (Ustaoset).
  18. Krafft, B.A., Melle, W., Knutsen, T., Bagøien, E., Broms, C., Ellertsen, B., Siegel, V., 2010. Distribution and demography of Antarctic krill in the Southeast Atlantic sector of the Southern Ocean during the austral summer 2008. Polar Biology 33, 957–968. DOI: 10.1007/s00300-010-0774-3
  19. Landry, M. R., & Hassett, R. (1982). Estimating the grazing impact of marine micro-zooplankton. Marine biology, 67 (3), 283-288. https://doi.org/10.1007/BF00397668
  20. Landry, M. R., Haas, L. W., & Fagerness, V. (1984). Dynamics of microbial plankton communities: experiments in Kaneohe Bay, Hawaii. Marine Ecology Progress Series, 16, 127. DOI: 10.3354/meps016127
  21. Löder, M. G. J., Aberle, N., Klaas, C., Kraberg, A. C., & Wiltshire, K. H. (2010). Conserving original in situ diversity in microzooplankton grazing set-ups. Marine Biodiversity Records, 3. https://doi.org/10.1017/S1755267210000254
  22. MacLennan, D. N., Fernandes, P. G., and Dalen, J. (2002). A consistent approach to definitions and symbols in fisheries acoustics. ICES J. Mar. Sci. 59, 365–369. doi: 10.1006/jmsc.2001.1158
  23. Matteson, A.R., Budinoff, C.R., Campbell, C.E., Buchan, A., Wilhelm, S.W. Estimating Virus Production Rates in Aquatic Systems. J. Vis. Exp. (43), e2196, DOI: 10.3791/2196 (2010).URL: http://www.jove.com/video/2196/
  24. Melle, W., Abrahamsen, M., Valdemarsen, J.W., Ellertsen, B., Knutsen, T. 2006. Design and performance of a new macro-plankton trawl in combination with a multiple cod-end system. SCOR Working Group 115, Mini Symposium on Standards for the Survey and Analysis of Plankton. Plymouth, England. 19-20 May 2006.
  25. Molari, M., Manini, E., & Dell'Anno, A. (2013). Dark inorganic carbon fixation sustains the functioning of benthic deep‐sea ecosystems. Global Biogeochemical Cycles, 27(1), 212-221. https://doi.org/10.1002/gbc.20030
  26. Morison, F., & Menden‐Deuer, S. (2017). Doing more with less? Balancing sampling resolution and effort in measurements of protistan growth and grazing‐rates. Limnology and Oceanography: Methods, 15 (9), 794-809. https://doi.org/10.1002/lom3.10200
  27. Munk, P. 1988. Catching large herring larvae: Gear applicability and larval distribution. J.Cons.int.Explor.Mer, 45:97-104.
  28. Murray, J.W., 2006. Ecology and Applications of Benthic Foraminifera. Cambridge University Press, Cambridge.
  29. Schönfeld, J., Alve, E., Geslin, E., Jorissen, F., Korsun, S., Spezzaferri, S., 2012. The FOBIMO (FOraminiferal BIo-MOnitoring) initiative — Towards a standardised protocol for soft-bottom benthic foraminiferal monitoring studies. Marine Micropaleontology 94-95: 1-13. DOI: 10.1016/j.marmicro.2012.06.001
  30. Simon M and Azam F (1989). Protein content and protein synthesis rates of planktonic marine bacteria. Mar. Ecol. Prog. Ser. 51: 201-213. DOI: 10.3354/meps051201
  31. Smith DC and Azam F (1992). A simple, economical method for measuring bacterial protein synthesis in seawater using 3H-leucine. Mar. Microb. Food Webs 6: 107-114.
  32. Šupraha L, Ljubešić Z, Mihanović H, Henderiks J. Coccolithophore life-cycle dynamics in a coastal Mediterranean ecosystem: Seasonality and species-specific patterns. J Plankton Res. 2016;38(5). https://doi.org/10.1093/plankt/fbw061
  33. Throndsen J (1995) Estimating cell numbers. In: GM Hallegraeff DM Anderson AD Cembella. Manual on Harmful Marine Microalgae. Paris: UNESCO. pp. 63-80.
  34. Utermöhl, H. (1958). Zur Vervollkommung der quantitativen Phytoplankton-Methodik. Mitt. Int. Ver. Theor. Angew. Limnol. 9, 1–38.
  35. Vaulot, D. Tangential flow filtration (TFF) concentration of phytoplankton. protocols.io. dx.doi.org/10.17504/protocols.io.krmcv46
  36. Weinbauer,MG., Rowe, JM., and Wilhelm, SW. (2010). Determing rates of virus production in acualtic systems by the virus reduction approach., MAVE, chapter 1 pp 1-8. doi:10.4319/mave.2010.978-0-9845591-0-7
  37. Wenneck, T.dL., Falkenhaug T., Bergstad OA (2008). Strategies, methods, and technologies adopted on the R.V. G.O. Sars MAR-ECO expedition to the Mid-Atlantic Ridge in 2004. Deep Sea Research II. 55: 6-28. https://doi.org/10.1016/j.dsr2.2007.09.017
  38. Wiebe, P.H., D. Allison, M. Kennedy, G. Moncoiffé 2015. A vocabulary for the configuration of net tows. http://dx.doi.org/10.1093/plankt/fbu101