Needles in an ocean haystack: using environmental DNA to study marine mammals in the North Atlantic

Authors

DOI:

https://doi.org/10.7557/3.6482

Keywords:

eDNA, cetacean, pinniped, biodiversity monitoring, ecosystem, population genetics, conservation, exploitation

Abstract

Marine mammals in the North Atlantic have experienced severe depletions due to overexploitation. While some species and populations have now recovered, there are numerous other anthropogenic activities impacting their North Atlantic ecosystem. Studying marine mammals is often associated with logistical challenges, and many species have an elusive nature, resulting in substantial knowledge gaps on the distribution, abundance and diversity of marine mammals in the North Atlantic. Environmental DNA (eDNA) is an emerging tool in biodiversity monitoring and has successfully been demonstrated to complement traditional monitoring methods for a wide range of marine taxonomic groups. The promising potential of seawater eDNA is owe to advances within an array of molecular methods used to extract, detect and/or sequence the genetic material of marine organisms from a single seawater sample. 

We present a literature review of eDNA studies of marine mammals and discuss the potential applications and practical challenges of eDNA in marine mammal research, management and conservation. 

Environmental DNA has already been introduced to a wide range of applications within marine mammal science, from detection of endangered species to population genetic assessments. Furthermore, eDNA has the power to capture other biologically important species in the marine ecosystem and food web, which could facilitate insight into the spatiotemporal variation of different marine communities in a changing environment. With methodological and technological standardization, eDNA based approaches have a promising potential to be integrated into regular monitoring practices and management strategies.

References

Adams, C. I. M., Knapp, M., Gemmell, N. J., Jeunen, G., Bunce, M., & Taylor, H. R. (2019). Beyond Biodiversity : Can Environmental DNA ( eDNA ) Cut it as a Population Genetics Tool ? February, 1–19. https://doi.org/10.20944/preprints201902.0048.v1

Afzali, S. F., Bourdages, H., Laporte, M., Mérot, C., Normandeau, E., Audet, C., & Bernatchez, L. (2021). Comparing environmental metabarcoding and trawling survey of demersal fish communities in the Gulf of St. Lawrence, Canada. Environmental DNA, 3(1), 22–42. https://doi.org/10.1002/EDN3.111

Agersnap, S., Sigsgaard, E. E., Jensen, M. R., Avila, M. D. P., Carl, H., Møller, P. R., Krøs, S. L., Knudsen, S. W., Wisz, M., & Thomsen, P. F. (2022). A national scale BioBlitz using citizen science and eDNA metabarcoding for monitoring coastal marine fish. https://doi.org/10.5061/DRYAD.X69P8CZKN

Aguzzi, J., Chatzievangelou, D., Marini, S., Fanelli, E., Danovaro, R., Flögel, S., Lebris, N., Juanes, F., de Leo, F. C., del Rio, J., Thomsen, L., Costa, C., Riccobene, G., Tamburini, C., Lefevre, D., Gojak, C., Poulain, P. M., Favali, P., Griffa, A., … Company, J. B. (2019). New High-Tech Flexible Networks for the Monitoring of Deep-Sea Ecosystems. Environmental Science & Technology, 53(12), 6616–6631. https://doi.org/10.1021/ACS.EST.9B00409

Albouy, C., Delattre, V., Donati, G., Frölicher, T. L., Albouy-Boyer, S., Rufino, M., Pellissier, L., Mouillot, D., & Leprieur, F. (2020). Global vulnerability of marine mammals to global warming. Scientific Reports 2020 10:1, 10(1), 1–12. https://doi.org/10.1038/s41598-019-57280-3

Andruszkiewicz Allan, E., Zhang, W. G., C. Lavery, A., & F. Govindarajan, A. (2021). Environmental DNA shedding and decay rates from diverse animal forms and thermal regimes. Environmental DNA, 3(2), 492–514. https://doi.org/10.1002/EDN3.141

Andruszkiewicz, E. A., Yamahara, K. M., Closek, C. J., & Boehm, A. B. (2020). Quantitative PCR assays to detect whales, rockfish, and common murre environmental DNA in marine water samples of the Northeastern Pacific. PLOS ONE, 15(12), e0242689. https://doi.org/10.1371/JOURNAL.PONE.0242689

Azarian, C., Foster, S., Devloo-Delva, F., & Feutry, P. (2021). Population differentiation from environmental DNA: Investigating the potential of haplotype presence/absence-based analysis of molecular variance. Environmental DNA, 3(3), 541–552. https://doi.org/10.1002/EDN3.143

Baker, C. S., Steel, D., Nieukirk, S., & Klinck, H. (2018). Environmental DNA ( eDNA ) from the wake of the whales : Droplet digital PCR for detection and species identification. Frontiers in Marine Science, 5(April), 1–11. https://doi.org/10.3389/fmars.2018.00133

Bakker, J., Wangensteen, O. S., Chapman, D. D., Boussarie, G., Buddo, D., Guttridge, T. L., Hertler, H., Mouillot, D., Vigliola, L., & Mariani, S. (2017). Environmental DNA reveals tropical shark diversity in contrasting levels of anthropogenic impact. Scientific Reports 2017 7:1, 7(1), 1–11. https://doi.org/10.1038/s41598-017-17150-2

Brandt, M. I., Pradillon, F., Trouche, B., Henry, N., Liautard-Haag, C., Cambon-Bonavita, M. A., Cueff-Gauchard, V., Wincker, P., Belser, C., Poulain, J., Arnaud-Haond, S., & Zeppilli, D. (2021). Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA. Scientific Reports 2021 11:1, 11(1), 1–14. https://doi.org/10.1038/s41598-021-86396-8

Bruce, K. ;, Blackman, R. C. ;, Bourlat, S. J. ;, Hellström, M. ;, Bakker, J. ;, Bista, I. ;, Bohmann, K. ;, Bouchez, A. ;, Brys, R. ;, Clark, K. ;, Elbrecht, V. ;, Fazi, S. ;, Fonseca, V. G. ;, Hänfling, B. ;, Leese, F. ;, Mächler, E. ;, Mahon, A. R. ;, Meissner, K. ;, Panksep, K. ;, … Deiner, K. (2021). A practical guide to DNA-based methods for biodiversity assessment. A Practical Guide to DNA-Based Methods for Biodiversity Assessment. https://doi.org/10.3897/AB.E68634

Chambault, P., Moesgaard Albertsen, C., Patterson, T. A., Hansen, R. G., Tervo, O., Laidre, K. L., & Peter Heide-Jørgensen, M. (2018). Sea surface temperature predicts the movements of an Arctic cetacean: the bowhead whale. Nature Scientific Reports, 8, 9658. https://doi.org/10.1038/s41598-018-27966-1

Chambault, P., Tervo, O. M., Garde, E., Hansen, R. G., Blackwell, S. B., Williams, T. M., Dietz, R., Albertsen, C. M., Laidre, K. L., Nielsen, N. H., Richard, P., Sinding, M. H. S., Schmidt, H. C., & Heide-Jørgensen, M. P. (2020). The impact of rising sea temperatures on an Arctic top predator, the narwhal. Scientific Reports 2020 10:1, 10(1), 1–10. https://doi.org/10.1038/s41598-020-75658-6

Chiovitti, A., Thorpe, F., Gorman, C., Cuxson, J. L., Robevska, G., Szwed, C., Duncan, J. C., Vanyai, H. K., Cross, J., Siemering, K. R., & Sumner, J. (2019). A citizen science model for implementing statewide educational DNA barcoding. PLOS ONE, 14(1), e0208604. https://doi.org/10.1371/JOURNAL.PONE.0208604

Closek, C. J., Santora, J. A., Starks, H. A., Schroeder, I. D., Andruszkiewicz, E. A., Sakuma, K. M., Bograd, S. J., Hazen, E. L., Field, J. C., & Boehm, A. B. (2019). Marine Vertebrate Biodiversity and Distribution Within the Central California Current Using Environmental DNA (eDNA) Metabarcoding and Ecosystem Surveys. Frontiers in Marine Science, 6, 732. https://doi.org/10.3389/FMARS.2019.00732/BIBTEX

Collins, R. A., Wangensteen, O. S., O’Gorman, E. J., Mariani, S., Sims, D. W., & Genner, M. J. (2018). Persistence of environmental DNA in marine systems. Communications Biology 2018 1:1, 1(1), 1–11. https://doi.org/10.1038/s42003-018-0192-6

Cordier, T., Frontalini, F., Cermakova, K., Apothéloz-Perret-Gentil, L., Treglia, M., Scantamburlo, E., Bonamin, V., & Pawlowski, J. (2019). Multi-marker eDNA metabarcoding survey to assess the environmental impact of three offshore gas platforms in the North Adriatic Sea (Italy). Marine Environmental Research, 146, 24–34. https://doi.org/10.1016/J.MARENVRES.2018.12.009

Deiner, K., Renshaw, M. A., Li, Y., Olds, B. P., Lodge, D. M., & Pfrender, M. E. (2017). Long-range PCR allows sequencing of mitochondrial genomes from environmental DNA. Methods in Ecology and Evolution, 8(12), 1888–1898. https://doi.org/10.1111/2041-210X.12836

Desforges, J. P., Hall, A., McConnell, B., Rosing-Asvid, A., Barber, J. L., Brownlow, A., de Guise, S., Eulaers, I., Jepson, P. D., Letcher, R. J., Levin, M., Ross, P. S., Samarra, F., Víkingson, G., Sonne, C., & Dietz, R. (2018). Predicting global killer whale population collapse from PCB pollution. Science, 361(6409), 1373–1376. https://doi.org/10.1126/SCIENCE.AAT1953/SUPPL_FILE/AAT1953_DESFORGES_SM_V2.PDF

Desportes, G., Hansen, R. G., & Pike, D. G. (2020). Introduction. NAMMCO Scientific Publications, 11. https://doi.org/10.7557/3.5670

Dietz, R., Letcher, R. J., Desforges, J. P., Eulaers, I., Sonne, C., Wilson, S., Andersen-Ranberg, E., Basu, N., Barst, B. D., Bustnes, J. O., Bytingsvik, J., Ciesielski, T. M., Drevnick, P. E., Gabrielsen, G. W., Haarr, A., Hylland, K., Jenssen, B. M., Levin, M., McKinney, M. A., … Víkingsson, G. (2019). Current state of knowledge on biological effects from contaminants on arctic wildlife and fish. Science of The Total Environment, 696, 133792. https://doi.org/10.1016/J.SCITOTENV.2019.133792

Djurhuus, A., Closek, C. J., Kelly, R. P., Pitz, K. J., Michisaki, R. P., Starks, H. A., Walz, K. R., Andruszkiewicz, E. A., Olesin, E., Hubbard, K., Montes, E., Otis, D., Muller-Karger, F. E., Chavez, F. P., Boehm, A. B., & Breitbart, M. (2020). Environmental DNA reveals seasonal shifts and potential interactions in a marine community. Nature Communications 2020 11:1, 11(1), 1–9. https://doi.org/10.1038/s41467-019-14105-1

Drouet, K., Jauzein, C., Herviot-Heath, D., Hariri, S., Laza-Martinez, A., Lecadet, C., Plus, M., Seoane, S., Sourisseau, M., Lemée, R., & Siano, R. (2021). Current distribution and potential expansion of the harmful benthic dinoflagellate Ostreopsis cf. siamensis towards the warming waters of the Bay of Biscay, North-East Atlantic. https://doi.org/10.1111/1462-2920.15406

Elbrecht, V., Vamos, E. E., Steinke, D., & Leese, F. (2018). Estimating intraspecific genetic diversity from community DNA metabarcoding data. PeerJ, 2018(4), e4644. https://doi.org/10.7717/PEERJ.4644/SUPP-8

Ficetola, G. F., Miaud, C., Pompanon, F., & Taberlet, P. (2008). Species detection using environmental DNA from water samples. Biology Letters, 4(4), 423–425. https://doi.org/10.1098/RSBL.2008.0118

Foote, A. D., Thomsen, P. F., Sveegaard, S., Wahlberg, M., Kielgast, J., Kyhn, L. A., Salling, A. B., Galatius, A., Orlando, L., & Gilbert, M. T. P. (2012). Investigating the Potential Use of Environmental DNA (eDNA) for Genetic Monitoring of Marine Mammals. PLoS ONE, 7(8), e41781. https://doi.org/10.1371/journal.pone.0041781

Fraija-Fernández, N., Bouquieaux, M. C., Rey, A., Mendibil, I., Cotano, U., Irigoien, X., Santos, M., & Rodríguez-Ezpeleta, N. (2020). Marine water environmental DNA metabarcoding provides a comprehensive fish diversity assessment and reveals spatial patterns in a large oceanic area. Ecology and Evolution, 10(14), 7560–7584. https://doi.org/10.1002/ECE3.6482

Gargan, L. M., Morato, T., Pham, C. K., Finarelli, J. A., Carlsson, J. E. L., & Carlsson, J. (2017). Development of a sensitive detection method to survey pelagic biodiversity using eDNA and quantitative PCR: a case study of devil ray at seamounts. Marine Biology, 164(5), 1–9. https://doi.org/10.1007/S00227-017-3141-X/FIGURES/4

Gautier, M., Foucaud, J., Gharbi, K., Cézard, T., Galan, M., Loiseau, A., Thomson, M., Pudlo, P., Kerdelhué, C., & Estoup, A. (2013). Estimation of population allele frequencies from next-generation sequencing data: pool-versus individual-based genotyping. Molecular Ecology, 22(14), 3766–3779. https://doi.org/10.1111/MEC.12360

Goldberg, C. S., Turner, C. R., Deiner, K., Klymus, K. E., Thomsen, P. F., Murphy, M. A., Spear, S. F., McKee, A., Oyler-McCance, S. J., Cornman, R. S., Laramie, M. B., Mahon, A. R., Lance, R. F., Pilliod, D. S., Strickler, K. M., Waits, L. P., Fremier, A. K., Takahara, T., Herder, J. E., & Taberlet, P. (2016). Critical considerations for the application of environmental DNA methods to detect aquatic species. Methods in Ecology and Evolution, 7(11), 1299–1307. https://doi.org/10.1111/2041-210X.12595

Halpern, B. S., Frazier, M., Afflerbach, J., O’Hara, C., Katona, S., Stewart Lowndes, J. S., Jiang, N., Pacheco, E., Scarborough, C., & Polsenberg, J. (2017). Drivers and implications of change in global ocean health over the past five years. PLOS ONE, 12(7), e0178267. https://doi.org/10.1371/JOURNAL.PONE.0178267

Hansen, B. K., Jacobsen, M. W., Middelboe, A. L., Preston, C. M., Marin, R., Bekkevold, D., Knudsen, S. W., Møller, P. R., & Nielsen, E. E. (2020). Remote, autonomous real-time monitoring of environmental DNA from commercial fish. Scientific Reports, 10(1), 1–8. https://doi.org/10.1038/s41598-020-70206-8

Harrison, J. B., Sunday, J. M., & Rogers, S. M. (2019). Predicting the fate of eDNA in the environment and implications for studying biodiversity. Proceedings of the Royal Society B, 286(1915). https://doi.org/10.1098/RSPB.2019.1409

Hauser, D. D. W., Laidre, K. L., & Stern, H. L. (2018). Vulnerability of arctic marine mammals to vessel traffic in the increasingly ice-free northwest passage and Northern Sea Route. Proceedings of the National Academy of Sciences of the United States of America, 115(29), 7617–7622. https://doi.org/10.1073/pnas.1803543115

Haver, S. M., Klinck, H., Nieukirk, S. L., Matsumoto, H., Dziak, R. P., & Miksis-Olds, J. L. (2017). The not-so-silent world: Measuring Arctic, Equatorial, and Antarctic soundscapes in the Atlantic Ocean. Deep Sea Research Part I: Oceanographic Research Papers, 122, 95–104. https://doi.org/10.1016/J.DSR.2017.03.002

Holman, L. E., Chng, Y., & Rius, M. (2021). How does eDNA decay affect metabarcoding experiments? Environmental DNA. https://doi.org/10.1002/EDN3.201

Howe, B. M., Miksis-Olds, J., Rehm, E., Sagen, H., Worcester, P. F., & Haralabus, G. (2019). Observing the oceans acoustically. Frontiers in Marine Science, 6(JUL), 426. https://doi.org/10.3389/FMARS.2019.00426/BIBTEX

Hunter, M. E., Meigs-Friend1, G., Ferrante1, J. A., Kamla, A. T., Dorazio, R. M., Diagne, L. K., Luna, F., Lanyon, J. M., Reid, J. P., & 1U.S. (2018). Surveys of environmental DNA (eDNA): a new approach to estimate occurrence in Vulnerable manatee populations. Endangered Species Research, 35, 101–111. https://doi.org/10.3354/esr00880

Insley, S. J., Halliday, W. D., Mouy, X., & Diogou, N. (2021). Bowhead whales overwinter in the Amundsen Gulf and Eastern Beaufort Sea. https://doi.org/10.1098/rsos.202268

Jerde, C. L. (2021). Can we manage fisheries with the inherent uncertainty from eDNA? Journal of Fish Biology, 98(2), 341–353. https://doi.org/10.1111/JFB.14218

Juhel, J. B., Marques, V., Polanco Fernández, A., Borrero-Pérez, G. H., Mutis Martinezguerra, M., Valentini, A., Dejean, T., Manel, S., Loiseau, N., Velez, L., Hocdé, R., Letessier, T. B., Richards, E., Hadjadj, F., Bessudo, S., Ladino, F., Albouy, C., Mouillot, D., & Pellissier, L. (2021). Detection of the elusive Dwarf sperm whale (Kogia sima) using environmental DNA at Malpelo island (Eastern Pacific, Colombia). Ecology and Evolution, 11(7), 2956. https://doi.org/10.1002/ECE3.7057

Knudsen, S., Ebert, R., Mortensen, P., Kuntze, F., Hesselsøe, M., Hassingboe, J., Thomsen, P., Sigsgaard, E., Egg, E., & Møller, P. (2019). Species-specific detection of six commercially important marine fishes in the Baltic Sea using environmental DNA. Journal of Experimental Marine Biology and Ecology, 510, 31–45.

Korneliussen, T. S., Albrechtsen, A., & Nielsen, R. (2014). ANGSD: Analysis of Next Generation Sequencing Data. BMC Bioinformatics, 15(1). https://doi.org/10.1186/S12859-014-0356-4

Kyhn, L. A., Tougaard, J., Thomas, L., Duve, L. R., Stenback, J., Amundin, M., Desportes, G., & Teilmann, J. (2012). From echolocation clicks to animal density—Acoustic sampling of harbor porpoises with static dataloggers. The Journal of the Acoustical Society of America, 131(1), 550. https://doi.org/10.1121/1.3662070

Liu, Y., Wikfors, G. H., Rose, J. M., McBride, R. S., Milke, L. M., & Mercaldo-Allen, R. (2019). Application of Environmental DNA Metabarcoding to Spatiotemporal Finfish Community Assessment in a Temperate Embayment. Frontiers in Marine Science, 6, 674. https://doi.org/10.3389/FMARS.2019.00674/BIBTEX

Lozano Mojica, J. D., & Caballero, S. (2021). Applications of eDNA Metabarcoding for Vertebrate Diversity Studies in Northern Colombian Water Bodies. Frontiers in Ecology and Evolution, 8, 522. https://doi.org/10.3389/FEVO.2020.617948/BIBTEX

Madduppa, H., Cahyani, N. K. D., Anggoro, A. W., Subhan, B., Jefri, E., Sani, L. M. I., Arafat, D., Akbar, N., & Bengen, D. G. (2021). eDNA metabarcoding illuminates species diversity and composition of three phyla (chordata, mollusca and echinodermata) across Indonesian coral reefs. Biodiversity and Conservation, 30(11), 3087–3114. https://doi.org/10.1007/S10531-021-02237-0/FIGURES/8

Matejusova, I., Graham, J., Bland, F., Lacaze, J. P., Herman, G., Brown, L., Dalgarno, E., Bishop, J. D., Kakkonen, J. E., Smith, K. F., & Douglas, A. (2021). Environmental DNA Based Surveillance for the Highly Invasive Carpet Sea Squirt Didemnum vexillum: A Targeted Single-Species Approach. Frontiers in Marine Science, 8, 728456. https://doi.org/10.3389/FMARS.2021.728456

Miya, M., Sato, Y., Fukunaga, T., Sado, T., Poulsen, J. Y., Sato, K., Minamoto, T., Yamamoto, S., Yamanaka, H., Araki, H., Kondoh, M., & Iwasaki, W. (2015). MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species. Royal Society Open Science, 2(7). https://doi.org/10.1098/RSOS.150088

Mugnai, F., Meglécz, E., Costantini, F., Abbiati, M., Bavestrello, G., Bertasi, F., Bo, M., Capa, M., Chenuil, A., Colangelo, M. A., de Clerck, O., Gutiérrez, J. M., Lattanzi, L., Leduc, M., Martin, D., Matterson, K. O., Mikac, B., Plaisance, L., Ponti, M., … Wangensteen, O. S. (2021). Are well-studied marine biodiversity hotspots still blackspots for animal barcoding? Global Ecology and Conservation, 32, e01909. https://doi.org/10.1016/J.GECCO.2021.E01909

NAMMCO. (2022). Https://Nammco.No/Marinemammals/.

NAMMCO-North Atlantic Marine Mammal Commision. (2021). Report of Ad hoc Working Group on Narwhal in East Greenland. October 2021, Copenhagen, Denmark.

Olsen, M. T., & Galatius, A. (2018). The history and effects of seal-fishery conflicts in Denmark THE NOW PROJECT: Living Resources and Human Societies around the North Water in the Thule Area, NW Greenland View project Evolution of odontocete skeletal morphology View project. MARINE ECOLOGY PROGRESS SERIES Mar Ecol Prog Ser, 595, 233–243. https://doi.org/10.3354/meps12510

Palsbøll, P. J., Allen, J., Bérubé, M., Clapham, P. J., Feddersen, T. P., Hammond, P. S., Hudson, R. R., Jørgensen, H., Katona, S., Larsen, A. H., Larsen, F., Lien, J., Mattila, D. K., Sigurjónsson, J., Sears, R., Smith, T., Sponer, R., Stevick, P., & Øien, N. (1997). Genetic tagging of humpback whales. Nature 1997 388:6644, 388(6644), 767–769. https://doi.org/10.1038/42005

Parsons, K. M., Everett, M., & Park, L. (2018). Water , water everywhere : environmental DNA can unlock population structure in elusive marine species Subject Category : Author for correspondence : Royal Society Open Science, 5. https://doi.org/http://dx.doi.org/10.1098/rsos.180537

Pike, D. G., Gunnlaugsson, T., Mikkelsen, B., Halldórsson, S. D., Víkingsson, G., Acquarone, M., & Desportes, G. (2019). Estimates of the Abundance of Cetaceans in the Central North Atlantic from the T-NASS Icelandic and Faroese Ship Surveys Conducted in 2007. NAMMCO Scientific Publications, 11. https://doi.org/10.7557/3.5269

Pike, D. G., Paxton, C. G. M., Gunnlaugsson, T., & Víkingsson, G. A. (2009). Trends in the distribution and abundance of cetaceans from aerial surveys in Icelandic coastal waters, 1986-2001. NAMMCO Scientific Publications, 7, 117–142. https://doi.org/10.7557/3.2710

Pinfield, R., Dillane, E., Runge, A. K. W., Evans, A., Mirimin, L., Niemann, J., Reed, T. E., Reid, D. G., Rogan, E., Samarra, F. I. P., Sigsgaard, E. E., & Foote, A. D. (2019). False‐negative detections from environmental DNA collected in the presence of large numbers of killer whales ( Orcinus orca ). Environmental DNA, 1(4), 316–328. https://doi.org/10.1002/edn3.32

Ramírez, F., Afán, I., Davis, L. S., & Chiaradia, A. (2017). Climate impacts on global hot spots of marine biodiversity. Science Advances, 3(2). https://doi.org/10.1126/SCIADV.1601198/SUPPL_FILE/1601198_SM.PDF

Reeves, R., McClellan, K., & Werner, T. (2013). Marine mammal bycatch in gillnet and other entangling net fisheries, 1990 to 2011. Endangered Species Research, 20(1), 71–97. https://doi.org/10.3354/esr00481

Reinholdt Jensen, M., Eva, |, Sigsgaard, E., Liu, S., Manica, A., Steffen, |, Bach, S., Michael, |, Hansen, M., Peter, |, Møller, R., Philip, |, Thomsen, F., Mads, C., Jensen, R., & Thomsen, P. F. (2020). Genome-scale target capture of mitochondrial and nuclear environmental DNA from water samples. https://doi.org/10.1111/1755-0998.13293

Roman, J., Altman, I., Dunphy-Daly, M. M., Campbell, C., Jasny, M., & Read, A. J. (n.d.). The Marine Mammal Protection Act at 40: status, recovery, and future of U.S. marine mammals. Ann. N.Y. Acad. Sci. https://doi.org/10.1111/nyas.12040

Rourke, M. L., Fowler, A. M., Hughes, J. M., Broadhurst, M. K., Dibattista, J. D., Fielder, S., Jackson, |, Walburn, W., & Furlan, E. M. (2021). Environmental DNA (eDNA) as a tool for assessing fish biomass: A review of approaches and future considerations for resource surveys. Environmental DNA, 00, 1–25. https://doi.org/10.1002/edn3.185

Ruppert, K. M., Kline, R. J., & Rahman, M. S. (2019). Past, present, and future perspectives of environmental DNA (eDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global eDNA. Global Ecology and Conservation, 17, e00547. https://doi.org/10.1016/J.GECCO.2019.E00547

Saenz-Agudelo, P., Delrieu-Trottin, E., Dibattista, J. D., Martínez-Rincon, D., Morales-González, S., Pontigo, | Felipe, Ramírez, P., Silva, A., Soto, M., & Correa, C. (2022). Monitoring vertebrate biodiversity of a protected coastal wetland using eDNA metabarcoding. Environmental DNA, 4(1), 77–92. https://doi.org/10.1002/EDN3.200

Salter, I., Joensen, M., Kristiansen, R., Steingrund, P., & Vestergaard, P. (2019). Environmental DNA concentrations are correlated with regional biomass of Atlantic cod in oceanic waters. Communications Biology 2019 2:1, 2(1), 1–9. https://doi.org/10.1038/s42003-019-0696-8

Schill, W. B., & Galbraith, H. S. (2019). Detecting the undetectable: Characterization, optimization, and validation of an eDNA detection assay for the federally endangered dwarf wedgemussel, Alasmidonta heterodon (Bivalvia: Unionoida). Aquatic Conservation: Marine and Freshwater Ecosystems, 29(4), 603–611. https://doi.org/10.1002/AQC.3069

Sepulveda, A. J., Hutchins, P. R., Forstchen, M., Mckeefry, M., & Swigris, A. M. (2020). The elephant in the lab (and field): Contamination in aquatic environmental DNA studies. Frontiers in Ecology and Evolution, 8. https://doi.org/10.3389/FEVO.2020.609973

Sevellec, M., Lacoursière-Roussel, A., Bernatchez, L., Normandeau, E., Solomon, E., Arreak, A., Fishback, L. A., & Howland, K. (2021). Detecting community change in Arctic marine ecosystems using the temporal dynamics of environmental DNA. Environmental DNA, 3(3), 573–590. https://doi.org/10.1002/EDN3.155

Sigsgaard, E. E., Jensen, M. R., Winkelmann, I. E., Møller, P. R., Hansen, M. M., & Thomsen, P. F. (2020). Population‐level inferences from environmental DNA—Current status and future perspectives. Evolutionary Applications, 13(2), 245–262. https://doi.org/10.1111/eva.12882

Sigsgaard, E. E., Nielsen, I. B., Bach, S. S., Lorenzen, E. D., Robinson, D. P., Knudsen, S. W., Pedersen, M. W., Jaidah, M. al, Orlando, L., Willerslev, E., Møller, P. R., & Thomsen, P. F. (2016). Population characteristics of a large whale shark aggregation inferred from seawater environmental DNA. Nature Ecology & Evolution, 1(1), 1–5. https://doi.org/10.1038/s41559-016-0004

Stat, M., Huggett, M. J., Bernasconi, R., Dibattista, J. D., Berry, T. E., Newman, S. J., Harvey, E. S., & Bunce, M. (2017). Ecosystem biomonitoring with eDNA: Metabarcoding across the tree of life in a tropical marine environment. Scientific Reports, 7(1), 1–11. https://doi.org/10.1038/s41598-017-12501-5

Stoeckle, M. Y., Adolf, J., Charlop-Powers, Z., Dunton, K. J., Hinks, G., & Vanmorter, S. M. (2021). Trawl and eDNA assessment of marine fish diversity, seasonality, and relative abundance in coastal New Jersey, USA. ICES Journal of Marine Science, 78(1), 293–304. https://doi.org/10.1093/ICESJMS/FSAA225

Székely, D., Natasja, |, Corfixen, L., Louise, |, Mørch, L., Steen, |, Knudsen, W., Mccarthy, M. L., Teilmann, J., Mads, |, Heide-Jørgensen, P., Morten, |, Olsen, T., & Olsen, M. T. (2021). Environmental DNA captures the genetic diversity of bowhead whales (Balaena mysticetus) in West Greenland. https://doi.org/10.1002/edn3.176

Tang, Y., Wu, Y., Liu, K., Li, J., Li, H., Wang, Q., Yu, J., & Xu, P. (2019). Investigating the distribution of the Yangtze finless porpoise in the Yangtze River using environmental DNA. PLOS ONE, 14(8), e0221120. https://doi.org/10.1371/JOURNAL.PONE.0221120

Thomsen, P. F., Rask, P., Sigsgaard, E. E., Knudsen, W., Ankjær, O., & Willerslev, E. (2016). Environmental DNA from Seawater Samples Correlate with Trawl Catches of Subarctic , Deepwater Fishes. 1–22. https://doi.org/10.1371/journal.pone.0165252

Tillotson, M. D., Kelly, R. P., Duda, J. J., Hoy, M., Kralj, J., & Quinn, T. P. (2018). Concentrations of environmental DNA (eDNA) reflect spawning salmon abundance at fine spatial and temporal scales. Biological Conservation, 220, 1–11. https://doi.org/10.1016/J.BIOCON.2018.01.030

Tønnessen, J., & Johnsen, A. (1982). The history of modern whaling. https://books.google.com/books?hl=hu&lr=&id=-miE3r5DgPUC&oi=fnd&pg=PR17&ots=EtV73LCWbJ&sig=RP0glvvEUAv9tkMJabPIH8HXHYc

Tsuji, S., Shibata, N., Sawada, H., & Ushio, M. (2020). Quantitative evaluation of intraspecific genetic diversity in a natural fish population using environmental DNA analysis. Molecular Ecology Resources, 20(5), 1323–1332. https://doi.org/10.1111/1755-0998.13200

Valsecchi, E., Arcangeli, A., Lombardi, R., Boyse, E., Carr, I. M., Galli, P., & Goodman, S. J. (2021). Ferries and Environmental DNA: Underway Sampling From Commercial Vessels Provides New Opportunities for Systematic Genetic Surveys of Marine Biodiversity. Frontiers in Marine Science, 8, 1136. https://doi.org/10.3389/FMARS.2021.704786/BIBTEX

Valsecchi, E., Bylemans, J., Goodman, S. J., Lombardi, R., Carr, I., Castellano, L., Galimberti, A., & Galli, P. (2020). Novel universal primers for metabarcoding environmental DNA surveys of marine mammals and other marine vertebrates. Environmental DNA. https://doi.org/10.1002/edn3.72

Valsecchi, E., Coppola, E., Pires, R., Parmegiani, A., Casiraghi, M., Galli, P., & Bruno, A. (2022). A species-specific qPCR assay provides novel insight into range expansion of the Mediterranean monk seal (Monachus monachus) by means of eDNA analysis. Biodiversity and Conservation 2022, 1–22. https://doi.org/10.1007/S10531-022-02382-0

van der Hoop, J. M., Vanderlaan, A. S. M., & Taggart, C. T. (2012). Absolute probability estimates of lethal vessel strikes to North Atlantic right whales in Roseway Basin, Scotian Shelf. Ecological Applications, 22(7), 2021–2033. https://doi.org/10.1890/11-1841.1

Yamahara, K. M., Preston, C. M., Birch, J., Walz, K., Marin, R., Jensen, S., Pargett, D., Roman, B., Ussler, W., Zhang, Y., Ryan, J., Hobson, B., Kieft, B., Raanan, B., Goodwin, K. D., Chavez, F. P., & Scholin, C. (2019). In situ autonomous acquisition and preservation of marine environmental dna using an autonomous underwater vehicle. Frontiers in Marine Science, 6(JUL), 373. https://doi.org/10.3389/FMARS.2019.00373/BIBTEX

Downloads

Published

2022-12-19

How to Cite

Székely, D., Cammen, K. M., & Tange Olsen, M. . (2022). Needles in an ocean haystack: using environmental DNA to study marine mammals in the North Atlantic. NAMMCO Scientific Publications, 12. https://doi.org/10.7557/3.6482